chronic kidney disease dataset machine learning

Logistic regression classifier also included the ‘pedal edema’ feature along with the previous two features mentioned. So the early prediction is necessary in combating the disease and to provide good treatment. We have been able to build a model based on labeled data that accurately predicts if a patient suffers from chronic kidney disease based on their personal characteristics. Hierarchical clustering doesn't require any assumption about the number of clusters since the resulting output is a tree-like structure that contains the clusters that were merged at every time-step. There are many factors such as blood pressure, diabetes, and other disorders contribute to gradual loss of kidney function over time. In each iteration of k-means, each person is assigned to a nearest group mean based on the distance metric and then the mean of each group is calculated based on the updated assignment. Based on its severity it can be classified into various stages with the later ones requiring regular dialysis or kidney transplant. 1. The benefit of using ensemble methods is that it aggregates multiple learning algorithms to produce one that performs in a more robust manner. Repository Web View ALL Data Sets: Chronic_Kidney_Disease Data Set Download: Data Folder, Data Set Description. Chronic_Kidney_Disease: This dataset can be used to predict the chronic kidney disease and it can be collected from the hospital nearly 2 months of period. We carry out PCA before using K-Means and hierarchical clustering so as to reduce it's complexity as well as make it easier to visualize the cluster differences using a 2D plot. Director, Analytics and Machine Learning Chronic kidney disease (CKD) is one of the major public health issues with rising need of early detection for successful and sustainable care. Chronic Kidney Disease (CKD) is a fatal disease and proper diagnosis is desirable. The biomedical dataset on chronic kidney disease is considered for analysis of classification model. Our goal is to use machine learning techniques and build a classification model that can predict if an individual has CKD based on various parameters that measure health related metrics such as age, blood pressure, specific gravity etc. The results are promising as majority of the classifiers have a classification accuracy of above 90%. Network machine learning algorithms (Basma Boukenze, et al., 2016). The procedure results are evaluated during this research paper with medical significance. There was missing data values in a few rows which was addressed by imputing them with the mean value of the respective column feature. Data mining methods and machine learning play a major role in this aspect of biosciences. The distance metric used in both the methods of clustering is Euclidean distance. The next best performance was by the two ensemble methods: Random Forest Classifier with 96% and Adaboost 95% accuracy. The stages of Chronic Kidney Disease (CKD) are mainly based on measured or estimated Glomerular Filtration Rate (eGFR). information assortment from UCI Machine Learning Repository Chronic_Kidney_Disease information Set_files. When chronic kidney disease reaches an advanced stage, dangerous levels of fluid, electrolytes and wastes can build up in your body. According to Hamad Medical Corporation [2], about 13% of Qatar's population suffers from CKD, whereas the global prevalence is estimated to be around 8–16% [3]. Multiple clusters can be obtained by intersecting the hierarchical tree at the desired level. Step-1: Download the files in the repository. These predictive models are constructed from chronic kidney disease dataset and the … In this paper, we present machine learning techniques for predicting the chronic kidney disease using clinical data. We evaluate the quality of the clustering based on a well known criteria known as purity. Similarly, examples of nominal fields are answers to yes/no type questions such as whether the patient suffers from hypertension, diabetes mellitus, coronary artery disease. It reduces the number of dimensions of a vector by maximizing the eigenvectors of the covariance matrix. In addition, we provided machine training methods for anticipating chronic renal disease with clinical information. Center for Machine Learning and Intelligent Systems : About Citation Policy Donate a Data Set Contact. Four machine learning methods are explored including K-nearest neighbors (KNN), support vector machine (SVM), logistic regression (LR), and decision tree classifiers. The target is the 'classification', which is either 'ckd' or 'notckd' - ckd=chronic kidney disease. Machine learning algorithms have been used to predict and classify in the healthcare field. C4.5 algorithm provides better results with less execution time and accuracy rate. Sorry, preview is currently unavailable. Results Classification In total, 6 different classification algorithms were used to compare their results. In this paper, we employ some machine learning techniques for predicting the chronic kidney disease using clinical data. If detected early, its adverse effects can be avoided, hence saving precious lives and reducing cost. This ensures that the information in the entire dataset is leveraged to generate a model that best explains the data. Chronic Kidney Disease dataset is used to predict patients with chronic kidney failure and normal person. Dataset Our dataset was obtained from the UCI Machine Learning repository, which contains about 400 individuals of which 250 had CKD and 150 did not. The iris flower dataset is built for the beginners who just start learning machine learning techniques and algorithms. This disease … Principal Component Analysis Principal Component Analysis (PCA) is a popular tool for dimensionality reduction. The most interesting and challenging tasks in day to day life is prediction in medical field. The last two classifiers fall under the category of ensemble methods. Kidney Disease: Machine Learning Model: 99%: Liver Disease: Machine Learning Model: 78%: Malaria : Deep Learning Model(CNN) 96%: Pneumonia: Deep Learning Model(CNN) 95% . Software Requirement … As Chronic Kidney Disease progresses slowly, early detection and effective treatment are the only cure to reduce the mortality rate. Chronic Kidney Disease (CKD) is a condition in which … The hierarchical clustering plot provides the flexibility to view more than 2 clusters since there might be gradients in the severity of CKD among patients rather than the simple binary representation of having CKD or not. The starting date of kidney failure may not be known, it … Interventions: None. By doing so, we shall be able to understand the different signals that identify if a patient at risk of CKD and help them by referring to preventive measures. Credit goes to Mansoor Iqbal (https://www.kaggle.com/mansoordaku) from where the dataset has been collected. Purity measures the number of data points that were classified correctly based on the ground truth which is available to us [5]. If nothing happens, download GitHub Desktop and try again. The components are made from UCI dataset of chronic kidney disease and the … The objective of the dataset is to diagnostically predict whether a patient is having chronic kidney disease or not, based on certain diagnostic measurements included in the dataset. Keywords: Chronic Kidney Disease (CKD), Machine Learning (ML), End-Stage Renal Disease (ESRD), Cardiovascular disease, data mining, machine learning, glomerular filtration rate (GFR) is the best indicator of I. A Comparative Study for Predicting Heart Diseases Using Data Mining Classification Methods, LEARNING TO CLASSIFY DIABETES DISEASE USING DATA MINING TECHNIQUES, Performance Analysis of Different Classification Algorithms that Predict Heart Disease Severity in Bangladesh, A Framework to Improve Diabetes Prediction using k-NN and SVM, Diabetes Type1 and Type2 Classification Using Machine Learning Technique. Center for Machine Learning and Intelligent Systems: About Citation Policy Donate a Data Set Contact. 1. 4 has 96% of its variables having missing values; 60.75% (243) cases have at least one missing value, and 10% of all values are missing. Enter the email address you signed up with and we'll email you a reset link. They are: logistic regression, decision tree, SVM with a linear kernel, SVM with a RBF kernel, Random Forest Classifier and Adaboost. 40. Clustering with more than 2 groups also might allow to quantify the severity of Chronic Kidney Disease (CKD) for each patient instead of the binary notion of just having CKD or not. [1] https://www.kidney.org/kidneydisease/aboutckd, [2] http://www.justhere.qa/2015/06/13-qatars-population-suffer-chronic-kidney-disease-patients-advised-take-precautions-fasting-ramadan/, [3] http://www.ncbi.nlm.nih.gov/pubmed/23727169, [4] https://archive.ics.uci.edu/ml/datasets/Chronic_Kidney_Disease, [5] http://nlp.stanford.edu/IR-book/html/htmledition/evaluation-of-clustering-1.html, [6] http://scikit-learn.org/stable/modules/ensemble.html. can take on only one of many categorical values. Chronic Kidney Disease Prediction using Machine Learning Reshma S1, Salma Shaji2, S R Ajina3, Vishnu Priya S R4, Janisha A5 1,2,3,4,5Dept of Computer Science and Engineering 1,2,3,4,5LBS Institute Of Technology For Women, Thiruvananthapuram, Kerala Abstract: Chronic Kidney Disease also recognized as Chronic Renal Disease, is an uncharacteristic functioning of kidney … There are five stages, but kidney function is normal in Stage 1, and minimally reduced in Stage 2. This work aims to combine work in the field of computer science and health by applying techniques from statistical machine learning to health care data. The size of the dataset is small and data pre-processing is not needed. Another disease that is causing threat to our health is the kidney disease. Use machine learning techniques to predict if a patient is suffering from a chronic kidney disease or not. Our aim is to discover the performance of each classifier on this type of medical information. We also aim to use topic models such as Latent Dirichlet Allocation to group various medical features into topics so as to understand the interaction between them. Chronic kidney disease (CKD) affects a sizable percentage of the world's population. The next two classifiers were: Logistic regression with 91% and Decision tree with 90%. Repository Web View ALL Data Sets: I'm sorry, the dataset "Chronic_Kidney_Disease#" does not appear to exist. Data Mining, Machine Learning, Chronic Kidney Disease, KNN, SVM, Ensemble. Yu et al. Each person is represented as a set of features provided in the dataset described earlier. 41. Healthcare Management is one of the areas which is using machine learning techniques broadly for different objectives. Chronic kidney disease mostly affects patients suffering from the complications of diabetes or high blood pressure and hinders their ability to carry out day-to-day activities. The dataset of CKD has been taken from the UCI repository. - Mayo Clinic. Template Credit: Adapted from a template made available by Dr. Jason Brownlee of Machine Learning Mastery. The target is the 'classification', which is either 'ckd' or 'notckd' - ckd=chronic kidney disease. Performances are judged by Basic concepts of We vary the number of groups from 2 to 5 to figure out which maximizes the quality of clustering. The classifier with the least accuracy was SVM with a RBF kernel which has about 60% accuracy. With the help of this data, you can start building a simple project in machine learning algorithms. However, the chronic kidney disease dataset as shown in Fig. Clustering After performing clustering on the entire dataset using K-Means we were able to plot it on a 2D graph since we used PCA to reduce it to two dimensions. This specific study discusses the classification of chronic and non-chronic kidney disease NCKD using support vector machine (SVM) neural networks. The chronic kidney disease dataset is based on clinical history, physical examinations, and laboratory tests. Each classifier has a different generalization capability and the efficiency depends on the underlying training and test data. Our training set consists of 75% of the data and the remaining 25% is used for testing. This tool will build a predictive model for chronic kidney disease, diabetes and time series forecasting of Malaria. Some of the numerical fields include: blood pressure, random blood glucose level, serum creatinine level, sodium and potassium in mEq/L. A higher purity score (max value is 1.0) represents a better quality of clustering. Predicting Chronic Kidney Disease based on health records Input (1) Execution Info Log Comments (5) This Notebook has been released under the Apache 2.0 open source license. In the case of SVM, kernels map input features into a different dimension which might be linearly separable. The purity score of our clustering is 0.62. After classifying the test dataset, feature analysis was performed to compare the importance of each feature. This is an unsupervised learning method that doesn't use the labeled information. The averaging method typically outputs the average of several learning algorithms and one such type we used is random forest classifier. /recommendto/form?webId=%2Fcontent%2Fproceedings%2Fqfarc&title=Qatar+Foundation+Annual+Research+Conference+Proceedings&issn=2226-9649, Qatar Foundation Annual Research Conference Proceedings — Recommend this title to your library, /content/papers/10.5339/qfarc.2016.ICTSP1534, http://instance.metastore.ingenta.com/content/papers/10.5339/qfarc.2016.ICTSP1534, Approval was partially successful, following selected items could not be processed due to error, Qatar Foundation Annual Research Conference Proceedings, Qatar Foundation Annual Research Conference Proceedings Volume 2016 Issue 1, https://doi.org/10.5339/qfarc.2016.ICTSP1534, https://www.kidney.org/kidneydisease/aboutckd, http://www.justhere.qa/2015/06/13-qatars-population-suffer-chronic-kidney-disease-patients-advised-take-precautions-fasting-ramadan/, http://www.ncbi.nlm.nih.gov/pubmed/23727169, https://archive.ics.uci.edu/ml/datasets/Chronic_Kidney_Disease, http://nlp.stanford.edu/IR-book/html/htmledition/evaluation-of-clustering-1.html, http://scikit-learn.org/stable/modules/ensemble.html. Some classifiers assign weights to each input feature along with a threshold that determines the output and updates them accordingly based on the training data. Both these approaches provide good insights into the patterns present in the underlying data. INTRODUCTION Chronic kidney disease (CKD) is the serious medical condition where the kidneys are damaged and blood cannot be filtered. You can download the paper by clicking the button above. On the other hand, a boosting method “combines several weak models to produce a powerful ensemble” [6]. Hierarchical clustering follows another approach whereby initially each datapoint is an individual cluster by itself and then at every step the closest two clusters are combined together to form a bigger cluster. The challenge now is being able to extract useful information and create knowledge using innovative techniques to efficiently process the data. The dataset was obtained from a hospital in southern India over a period of two months. Step-2: Get into the downloaded folder, open command prompt in that directory and install all the … We also have ground truth as to if a patient has CKD or not, which can be used to train a model that learns how to distinguish between the two classes. Abstract - Chronic Kidney Disease prediction is one of the most important issues in healthcare analytics. Your kidneys filter wastes and excess fluids from your blood, which are then excreted in your urine. Red blood cell feature was included as an important feature by Decision tree and Adaboost classifier. Keywords: Chronic kidney disease, data mining, Clinical information, data Transformations, Decision-making algorithm . K-means involves specifying the number of classes and the initial class means which are set to random points in the data. QScience.com © 2021 Hamad Bin Khalifa University Press. In classification we built a model that can accurately classify if a patient has CKD based on their health parameters. In Qatar, due to the rapidly changing lifestyle there has been an increase in the number of patients suffering from CKD. Ada boost is an example of boosting method that we have used. Both were able to classify patients with 100% accuracy on unseen test data. Regression Analysis Cluster Analysis Time series analysis and forecasting of Malaria information. The dataset was obtained from a hospital in southern India over a period of two months. Experimental results showed over 93% of success rate in classifying the patients with kidney diseases based on three performance … The accuracy of classification algorithms depend on the use of correct feature selection algorithms to reduce … In this project, I use Logistic Regression and K-Nearest Neighbors (KNN) to diagnose CKD. DNN is now been applied in health image processing to detect various ailment such as cancer and diabetes. 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Been used to predict if a patient has CKD based on its severity it can be obtained intersecting... Total there are 24 fields, of which 11 are numeric and 13 nominal! Maximizing the eigenvectors of the classifiers were: Logistic regression with 91 % and Adaboost 95 %.. Deep neural Network ( DNN ) is the serious medical condition where the dataset chronic... Data, you can Download the paper chronic kidney disease dataset machine learning clicking the button above 5 ] boosting method “ combines weak. With 91 % and Adaboost classifier an increase in the entire dataset is small data! Dialysis or kidney transplant the model, a boosting method “ combines several weak models produce. Folio: 20 photos of leaves for each of 32 different species:... While training the model, a boosting method “ combines several weak models produce... Generated from various sources across ALL domains ) neural networks increase in the data. Center for machine learning and Intelligent Systems: About Citation Policy Donate data... Bayesian classification and clustering the dataset was obtained from a chronic kidney disease using clinical.! Solving intricate and complex problems, SVM, ensemble small and data mining, machine learning Chronic_Kidney_Disease!
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